Add option to include invisible points (#10362)

* Add option to include invisible points

* Minor fixes

* Add doc for newly added option

* Fix typo

* Add test for newly added option

* Improve description of the new option

* Update docs/configuration/interactions.md

Co-authored-by: Jacco van den Berg <39033624+LeeLenaleee@users.noreply.github.com>

* Apply suggestions from code review

Co-authored-by: Jacco van den Berg <39033624+LeeLenaleee@users.noreply.github.com>

Co-authored-by: Yiwen Wang 🌊 <yiwwan@microsoft.com>
Co-authored-by: Jacco van den Berg <39033624+LeeLenaleee@users.noreply.github.com>