fix: resolve @effect/cluster dependency issue and enforce ESM-only

- Remove NodeContext.layer and NodeRuntime from CLI runtime to avoid @effect/cluster dependency
- Add noCommonJs error rule to biome.json to enforce ESM-only codebase
- Fix CommonJS require() usage in utils.ts by converting to ESM imports
- Remove problematic publish command from CLI due to module resolution issues
- Update dependency versions to resolve platform compatibility
- CLI infrastructure now stable and functional without cluster dependencies

BREAKING CHANGE: Publish command temporarily removed from CLI due to import issues