bpo-34170: _PyCoreConfig_Read() leaves Py_IsolatedFlag unchanged (GH-8361)

* _PyCoreConfig_Read() no longer directly modifies Py_IsolatedFlag
  and Py_NoSiteFlag global configuration flags. The function now
  requires two pointers to integer, so these flags can be set later,
  to avoid side effets in _PyCoreConfig_Read().
* pathconfig_global_init() now leaves Py_IsolatedFlag and
  Py_NoSiteFlag unchanged.
* Fix pathconfig_global_init(): avoid computing the path
  configuration twice, use _PyCoreConfig_SetPathConfig().